project_onto_umap: given a 'uwot' model in metadata(x)$uwot, project y onto...
In trichelab/velocessor: The world's dumbest single-cell RNA velocity calculator and loader
Description
Usage
Arguments
Value
See Also
View source: R/project_onto_umap.R
Description
given a uwot model in metadata(x)$uwot, project y onto those coordinates
Usage
1
project_onto_umap(x, y, rdn = NULL, ...)
Arguments
x
a SingleCellExperiment where !is.null(metadata(x)$uwot)
y
a SingleCellExperiment with samples to map onto x's model
rdn
reducedDimName to use ("HARMONY" if present, "PCA" otherwise)
...
additional parameters for uwot::umap_transform
Value
1
embedding coordinates for y onto x
See Also
1
uwot::umap_transform
trichelab/velocessor documentation built on Jan. 5, 2022, 6:27 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value See Also
View source: R/project_onto_umap.R
Description
given a uwot model in metadata(x)$uwot, project y onto those coordinates
Usage
1 | project_onto_umap(x, y, rdn = NULL, ...)
|
Arguments
x |
a SingleCellExperiment where !is.null(metadata(x)$uwot) |
y |
a SingleCellExperiment with samples to map onto x's model |
rdn |
reducedDimName to use ("HARMONY" if present, "PCA" otherwise) |
... |
additional parameters for uwot::umap_transform |
Value
1 | embedding coordinates for y onto x
|
See Also
1 | uwot::umap_transform
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.