Man pages for vicstefanou/ViSCA
Cell-Movie Analysis and Visualization
| add_attr_growth_fit_pars | Compute growth curves of an attribute |
| add_attr_roc | Add ROC attribute |
| add_branch | Add a branch to an LT |
| create_cell_life | Visualize cell life |
| createFDT | Create cells' FDT |
| createFLT | Create cells' FLT |
| create_movie | Create movie |
| extract_branch | Extract a branch from a tree |
| get_attr_names | Get attributes' names |
| get_attr_stats | Get statistic of an attribute |
| get_attr_vals | Get attribute's values |
| get_cand_merge_cells | Find candidate merge cells |
| get_cand_mother_cells | Find candidate mothers |
| get_cell_attr_vals | Get attributes' values of a cell |
| get_cell_fam | Get family cells of a cell |
| get_cells | Get cells of a tree |
| get_DT_cell | Get the label of the cell of a cell instant |
| get_LT_cell | Get the label of an instant of a cell |
| import_basca | Import _BaSCA_ data |
| import_json | Import custom-made data |
| import_oufti | Import _Oufti_ data |
| import_ss | Import _SuperSegger_ data |
| isConnected | Check if a tree is connected |
| isSubtree | Check if a tree is a subtree of another tree |
| merge_cells | Merge two cells |
| plot_baranyi | Plot growth curves of cell counts |
| plot_col_tree | Plot colonies' lineage tree |
| plot_dot_attr2 | Create scatter plot of two attributes |
| plot_dot_attr2_gen2 | Create scatter plot of attribute(s) between two generations |
| plot_dot_attr3 | Create scatter plot of three attributes |
| plot_dot_attr_fam | Create scatter plot of an attribute between family cells |
| plot_dot_time_attr | Create dot plot of an attribute by time |
| plot_growth_attr | Plot raw growth curves of an attribute |
| plot_growth_attr_cell | Plot single-cell growth curve of an attribute |
| plot_growth_attr_fit | Plot fitted growth curves of an attribute |
| plot_hist_attr | Create histogram of an attribute |
| plot_Ncells | Plot cell counts |
| plot_pdf_attr | Plot the PDF of an attribute |
| plot_time_attr | Plot mean and sd of an attribute per frame |
| plot_tree | Plot a tree |
| plot_viobox_attr | Create violin plot or boxplot for an attribute |
| save_tree | Save a tree on disc |
| select_subtree | Select a subtree |
| split_cell | Split a cell |
| unite_trees | Unite multiple trees |
| view_cell | View a cell |
| ViSCA | Overview of the ViSCA package |
