view_cell: View a cell
In vicstefanou/ViSCA: Cell-Movie Analysis and Visualization

Description Usage Arguments Details Prerequisites

Displays the images of a set of given cells in the Plots Pane of RStudio.

1	view_cell(LT, cells, cell_list, col_list, Ncols)

`LT`	The lineage tree where the cells specified in `cells` belong, an object of class `"igraph"`.
`cells`	The labels of the cells in the `LT` to be viewed, a vector of character strings. They can be any non-root cells, as returned from `get_cells`.
`cell_list`	A list containing all the cell instants of the movie.
`col_list`	A list containing all the colony instants of the movie.
`Ncols`	Number of colonies in the movie, a non-zero positive integer value.

A separate image for each cell specified in cells is generated. The cell is viewed in its colony and is marked as red. The rest cells of the colony are marked as white.

This function can be used by BaSCA users, importing the data with import_basca.

Users of Oufti or SuperSegger who imported the data with import_oufti or import_ss, respectively, are excluded from using this function, as no colony list was returned.

If import_json was used for importing the data, it is necessary that cell list elements have the pixelList and colId components and colony list elements have the colImage component. See import_json for more details. In other case, this function cannot be used (throws an error).