Description Usage Arguments Details Value
Computes and plots the mean and standard deviation of a numeric attribute of a lineage or division tree per frame. The plot can be created for each colony or generation or for the whole population.
1 2 3 4 |
tree |
The lineage or division tree, an object of class |
treeT |
A character string naming the type of
|
attr |
The name of the attribute in the |
unit |
The unit of |
grouped |
A character string naming the grouping method:
|
groups |
The IDs of the groups for which to create the plot, a vector of positive integer values.
This argument is ignored in case |
Ngroups |
Number of colonies in the movie (if |
save |
A logical value ( |
savePars |
A named list specifying the parameters of each generated image file.
This argument is ignored in case
|
A separate plot for each group specified in groups
is generated.
Each plot is created considering all cells that are included in the analysis,
as returned from get_cells
,
except for cells with NA
value in attr
.
x-axis represents the time in frames.
The range of x and y-axis values depicted in each plot is common and
is calculated as the range of the corresponding values of all specified groups.
Color denotes the corresponding group.
A named list with the following components:
group |
The ID of the group (a positive integer value)
or |
data |
A dataframe with the following columns:
For groups with no cells, no plot is generated and |
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