Description Usage Arguments Prerequisites
Plots the colonies' lineage tree.
1 2 3 |
col_list |
A list containing all the colony instants of the movie. |
Ncols |
Number of colonies in the movie, a non-zero positive integer value. |
sizeV |
Size of vertices, a non-zero positive numeric value.
The default value is |
sizeE |
Width of edges, a non-zero positive numeric value.
The default value is |
sizeL |
Size of explanatory legends and title, a non-zero positive numeric value.
The default value is |
save |
A logical value ( |
savePars |
A named list specifying the parameters of the generated image file.
This argument is ignored in case
|
This function can be used by BaSCA users, importing the data with import_basca
.
Users of Oufti or SuperSegger
who imported the data with import_oufti
or import_ss
, respectively,
are excluded from using this function, as no colony list was returned.
For other users, it is necessary that a colony list was imported with import_json
.
In other case, no colony list exists and this function cannot be used.
Nodes represent the colony instants of the movie and are colored based on the ID of the corresponding colony. The imaginary root colony instant is colored white. Gray nodes are colony instants which have arised from merged colonies.
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