Description Usage Arguments Details Value
Creates the dot plot of a numeric attribute of a lineage or division tree by time.
1 2 3 |
tree |
The lineage or division tree, an object of class |
treeT |
A character string naming the type of
|
attr |
The name of the attribute in the |
unit |
The unit of |
Nbins |
Number of equally spaced bins to be used for |
save |
A logical value ( |
savePars |
A named list specifying the parameters of the generated image file.
This argument is ignored in case
|
Each data point (x,y) represents the time in frames and the value of attr
of a cell, respectively.
The dot plot is created for all cells that are included in the analysis,
as returned from get_cells
,
except for cells with NA
value in attr
.
Data points are dot points colored based on the density of the Y variable value at every time point x.
Binning is applied on the range of all attr
values.
Density represents the counts (number of data points) in each bin at every time point x.
Ultimately, the plot is a color representation of the histogram of attr
in time.
A named list with the following components:
Ncells |
Number of cells, a non-zero positive integer value. |
r |
The Pearson correlation coefficient (a numeric value in the range |
regression |
A named list with the following components:
In case less than 2 unique data points exist, |
In case no cells exist, no plot is generated and NULL
is returned.
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