README.md

In xiayh17/RNAseqStat2: A Pipeline to Process RNAseq Data

RNAseqStat2

The goal of RNAseqStat2 is to do DEG analysis

Installation

You can install the development version of RNAseqStat2 from GitHub with:

# install.packages("devtools")
devtools::install_github("xiayh17/RNAseqStat2")

Example

This is a basic example which shows you how to solve a common problem:

library(RNAseqStat2)
library(airway)

data("airway")

row_counts <- as.data.frame(assay(airway))

group_list <- as.character(colData(airway)$dex)

data_i <- Create_DEGContainer(species = "Human",
                              dataType = "Counts",
                              idType = "ENSEMBL",
                              expMatrix = row_counts,
                              groupInfo = group_list,
                              caseGroup = "trt")

# run all in one line
data_o <- runALL(object = data_i,dir = "output_test")

更多参考文档 https://www.yuque.com/xiayonghe/rnaseqstat2

xiayh17/RNAseqStat2 documentation built on May 27, 2023, 12:13 p.m.