Files in xiayh17/RNAseqStat2
A Pipeline to Process RNAseq Data
.Rbuildignore
.gitignore
CITATION.cff
DESCRIPTION
LICENSE
NAMESPACE
R/CreateDEGContainer.R
R/MSigDBSummary.R
R/Visualization_DEG.R
R/Visualization_DEGvolcano.R
R/Visualization_check.R
R/Visualization_enrichBar.R
R/Visualization_enrichCirclize.R
R/Visualization_gse.R
R/allClass.R
R/allGeneric.R
R/allMethods.R
R/createOB.R
R/createParam.R
R/degGroup.R
R/degResolve.R
R/degResolveArray.R
R/degSummary.R
R/gseResolve.R
R/gseSummary.R
R/hyperResolve.R
R/hyperSummary.R
R/msigdbResolve.R
R/runALL.R
R/runCheck.R
R/runDEG.R
R/runGSEA.R
R/runHyper.R
R/runMSigDB.R
R/utils-go.R
R/utils-pipe.R
R/utils.R
README.md
RNAseqStat2.Rproj
dev/Msigdb.R
dev/RNAseqStat2.xmind
dev/TestWorkflowArray.R
dev/Testworkflow.R
dev/bingxing.R
dev/ci.R
dev/deg_data.Rdata
dev/git.R
dev/license.R
dev/load.R
dev/minimal_step.R
dev/readme.R
dev/test_GO.R
dev/theme.R
dev/usepackages.R
man/Create_DEGContainer.Rd
man/Create_MSigDB.Rd
man/Create_dataInfo.Rd
man/Create_gseParam.Rd
man/Create_hyperParam.Rd
man/Create_msigdbGSEAparam.Rd
man/Create_msigdbHyperParam.Rd
man/Create_msigdbParam.Rd
man/Create_treatInfo.Rd
man/DEGContainer.Rd
man/DEGtopHeatmap.Rd
man/DEGvenn.Rd
man/DESeq2_resolve.Rd
man/FC_Identify.Rd
man/GSEAbar.Rd
man/GSEAplot.Rd
man/HKG_check.Rd
man/MSigDB.Rd
man/MSigDBSummary.Rd
man/PointVolcano.Rd
man/ac_.Rd
man/box_check.Rd
man/cleanSYMBOL.Rd
man/commonGroup.Rd
man/compareEnrichCircle.Rd
man/cor500_check.Rd
man/corall_check.Rd
man/cutFC_Verify.Rd
man/cutMuch.Rd
man/dataDEG.Rd
man/dataInfo.Rd
man/degGroup.Rd
man/degResolve.Rd
man/degResolveArray.Rd
man/degResults.Rd
man/degSummary.Rd
man/deg_here.Rd
man/density_check.Rd
man/edgeR_resolve.Rd
man/eggnogG2T.Rd
man/enrichBar.Rd
man/enrichGO2.Rd
man/exprBox.Rd
man/exprCorHeatmap.Rd
man/exprHKGheatmap.Rd
man/exprPCA.Rd
man/exprRidges.Rd
man/exprTopHeatmap.Rd
man/geom_volcano_point.Rd
man/geom_volcano_text.Rd
man/get_breaks.Rd
man/groupCir.Rd
man/gseGO2.Rd
man/gseMSigDB.Rd
man/gseResolve.Rd
man/gseSummary.Rd
man/gsvaResolve.Rd
man/heatCir.Rd
man/heatLegend.Rd
man/highlightGroup.Rd
man/hyperBar.Rd
man/hyperMSigDB.Rd
man/hyperMSigDB_Resolve.Rd
man/hyperResolve.Rd
man/hyperSummary.Rd
man/hyper_GS.Rd
man/idLegend.Rd
man/limma_resolve.Rd
man/limma_resolveArray.Rd
man/linkCir.Rd
man/modelEnrich.Rd
man/msigdbGet.Rd
man/newDEGContainer.Rd
man/paletteCir.Rd
man/pca_check.Rd
man/pipe.Rd
man/pvalue_Identify.Rd
man/rectCir.Rd
man/rectCirDiscrete.Rd
man/runALL.Rd
man/runCheck.Rd
man/runDEG.Rd
man/runGSEA.Rd
man/runHyper.Rd
man/runMSigDB.Rd
man/textBarData.Rd
man/theme_volcano.Rd
man/toSYMBOL.Rd
man/top1000_check.Rd
man/topGene.Rd
man/volcano_nudge_x_down.Rd
man/volcano_nudge_x_up.Rd
