runALL: run all workflow
In xiayh17/RNAseqStat2: A Pipeline to Process RNAseq Data
runALL R Documentation
run all workflow
Description
runALL include runCheck runDEG runHyper runGSEA runMSigDB
Usage
runALL(object, dir = "output", top = 10, parallel = T, GO = FALSE, KEGG = TRUE)
Arguments
object
a DEGContainer
dir
a directory to store results
top
top for enrich result filter
parallel
use parallel in DESeq2
GO
logic, run GO in enrich step
KEGG
logic, run KEGG in enrich step
Value
a DEGContainer
xiayh17/RNAseqStat2 documentation built on May 27, 2023, 12:13 p.m.
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| runALL | R Documentation |
run all workflow
Description
runALL include runCheck runDEG runHyper runGSEA runMSigDB
Usage
runALL(object, dir = "output", top = 10, parallel = T, GO = FALSE, KEGG = TRUE)
Arguments
object |
a DEGContainer |
dir |
a directory to store results |
top |
top for enrich result filter |
parallel |
use parallel in DESeq2 |
GO |
logic, run GO in enrich step |
KEGG |
logic, run KEGG in enrich step |
Value
a DEGContainer
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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