degResolve: run DEG minimal

View source: R/degResolve.R

degResolveR Documentation

run DEG minimal

Description

run DEG module in limma, DESeq2 and edgeR

Usage

degResolve(object, dir = ".", prefix = "2-DEG", parallel = FALSE, qc = TRUE)

Arguments

object

a DEGContainer contains at least dataInfo

dir

a directory to store results

parallel

if FALSE, no parallelization. if TRUE, parallel execution using BiocParallel

Value

a csv file and a DEG_container ob

Examples

## Not run: 
degResolve(counts_input,group_list,case_group = "T", control_group = "C",dir = tempdir())

## End(Not run)

xiayh17/RNAseqStat2 documentation built on May 27, 2023, 12:13 p.m.