degResolve: run DEG minimal

In xiayh17/RNAseqStat2: A Pipeline to Process RNAseq Data

run DEG minimal

Description

run DEG module in limma, DESeq2 and edgeR

Usage

degResolve(object, dir = ".", prefix = "2-DEG", parallel = FALSE, qc = TRUE)

Arguments

object	a DEGContainer contains at least dataInfo
dir	a directory to store results
parallel	if FALSE, no parallelization. if TRUE, parallel execution using BiocParallel

Value

a csv file and a DEG_container ob

Examples

## Not run: 
degResolve(counts_input,group_list,case_group = "T", control_group = "C",dir = tempdir())

## End(Not run)

xiayh17/RNAseqStat2 documentation built on May 27, 2023, 12:13 p.m.