box_check: Boxplot of expression matrix

In xiayh17/RNAseqStat2: A Pipeline to Process RNAseq Data

Boxplot of expression matrix

Description

Check data by box plot

Usage

box_check(
  data,
  group,
  dir = ".",
  prefix = "1-run_check",
  palette = RColorBrewer::brewer.pal(3, "Set2")[1:2],
  ...
)

Arguments

data	a cpm data frame of rows in genes and columns in samples
group	a list ordered by samples in data
dir	a directory to store results
prefix	a prefix of file names in this step
palette	a color palette for plots
...	more parameters in exprBox

Value

a ridges plot file

Examples

density_check(data,group)

xiayh17/RNAseqStat2 documentation built on May 27, 2023, 12:13 p.m.