box_check: Boxplot of expression matrix

View source: R/runCheck.R

box_checkR Documentation

Boxplot of expression matrix

Description

Check data by box plot

Usage

box_check(
  data,
  group,
  dir = ".",
  prefix = "1-run_check",
  palette = RColorBrewer::brewer.pal(3, "Set2")[1:2],
  ...
)

Arguments

data

a cpm data frame of rows in genes and columns in samples

group

a list ordered by samples in data

dir

a directory to store results

prefix

a prefix of file names in this step

palette

a color palette for plots

...

more parameters in exprBox

Value

a ridges plot file

Examples

density_check(data,group)

xiayh17/RNAseqStat2 documentation built on May 27, 2023, 12:13 p.m.