compareEnrichCircle: Plot circos of common ID

In xiayh17/RNAseqStat2: A Pipeline to Process RNAseq Data

Plot circos of common ID

Description

After a enrich analysis across limma, edgeR, DESeq2 results. How about the distribution among different datset.

Usage

compareEnrichCircle(
  result_g,
  group = "model",
  height = 12000,
  width = 10000,
  mar = c(8, 0, 0, 17),
  filename = "circlize_cross.pdf",
  IDpalette = as.character(MetBrewer::met.brewer("Signac", length(unique(result_g$ID)))),
  heatCircle1 = "Count",
  heatCircle2 = "qvalue",
  heatCircle1Pal = c("#e5f5e0", "#a1d99b", "#31a354"),
  heatCircle2Pal = c("#efedf5", "#bcbddc", "#756bb1"),
  groupPal = c("#1f78b4", "#33a02c", "#ff7f00", "#b15928"),
  group_name = c("edgeR", "limma", "DESeq2", "merge")
)

Arguments

result_g	results of modelEnrich or similar format data
group	which column used to group data
height	height of plot
width	width of plot
mar	margin of bottom, left, top, right around circos
filename	filename
IDpalette	color for unique ID
heatCircle1	which column used to first outer circle
heatCircle2	which column used to second outer circle
heatCircle1Pal	color of first outer circle
heatCircle2Pal	color of second outer circle
groupPal	color for every group
group_name	group name

Value

a file store plot

Examples

compareEnrichCircle(result_g)

xiayh17/RNAseqStat2 documentation built on May 27, 2023, 12:13 p.m.