cor500_check | R Documentation |
Check data quality by calculating correlation of all samples but top 500 genes
cor500_check(
data,
group,
dir = ".",
prefix = "1-run_check",
palette = RColorBrewer::brewer.pal(3, "Set2")[1:2]
)
group |
a list ordered by samples in data |
dir |
a directory to store results |
prefix |
a prefix of file names in this step |
palette |
a color palette for plots |
counts_data |
a counts data frame of rows in genes and columns in samples |
a Heatmap shows correlation of all samples to 500 genes
cor500_check(counts_input, group)
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