exprBox: Boxplot of all samples

In xiayh17/RNAseqStat2: A Pipeline to Process RNAseq Data

Boxplot of all samples

Description

plot a boxplot of all samples

Usage

exprBox(
  expr,
  group_list,
  palette = RColorBrewer::brewer.pal(3, "Set2")[1:2],
  main = "Boxplot of all samples",
  filename = NA,
  x = "Samples",
  y = "log2(cpm(count)+1)",
  height = 4.46,
  width = 8.3
)

Arguments

expr	a expression matrix
group_list	a character vector order by samples
palette	group palette
main	plot title
filename	file name you want to save plot
x	x axis title
y	y axis title
height	height of plot
width	width of plot

Examples

exprBox(counts_input,group_list=group_list)

xiayh17/RNAseqStat2 documentation built on May 27, 2023, 12:13 p.m.