Create_dataInfo: create 'dataInfo'

In xiayh17/RNAseqStat2: A Pipeline to Process RNAseq Data

create dataInfo

Description

a function to create dataInfo OB

Usage

Create_dataInfo(
  species,
  dataType,
  idType,
  expMatrix,
  groupInfo,
  caseGroup,
  filterMethod,
  matrixFiltered
)

Arguments

species	species for your data. 'Human' or 'Mouse'
dataType	kind of expresses value matrix. 'Counts' (Integer) or 'Array' (Decimal).
idType	kind of gene id. 'ENSEMBL' or 'SYMBOL', If 'ENSEMBL', it will be automatically converted to 'SYMBOL'.
expMatrix	expresses value matrix. Should be a data.frame row named by gene ID and column named by Sample
groupInfo	a Character Vectors ordered by samples in matrix.
caseGroup	a Character names of case group.
filterMethod	a function used to filter expresses value matrix.
matrixFiltered	a expresses value matrix after filter by 'filterMethod'.

Value

dataInfo

xiayh17/RNAseqStat2 documentation built on May 27, 2023, 12:13 p.m.