hyper_GS: Get a significant difference gene list
In xiayh17/RNAseqStat2: A Pipeline to Process RNAseq Data
hyper_GS R Documentation
Get a significant difference gene list
Description
Get a significant difference gene list
Usage
hyper_GS(object, which, type, OrgDb = NULL, category = "H")
Arguments
object
a DEGContainer
which
kinds of DEG; can be "limma", "edgeR", "DESeq2" or "MSigDB"
type
"ENTREZID" or "SYMBOL"
OrgDb
OrgDb
category
MSigDB collection abbreviation, such as H or C1.
Examples
hyper_GS(object, which, type)
xiayh17/RNAseqStat2 documentation built on May 27, 2023, 12:13 p.m.
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| hyper_GS | R Documentation |
Get a significant difference gene list
Description
Get a significant difference gene list
Usage
hyper_GS(object, which, type, OrgDb = NULL, category = "H")
Arguments
object |
a DEGContainer |
which |
kinds of DEG; can be "limma", "edgeR", "DESeq2" or "MSigDB" |
type |
"ENTREZID" or "SYMBOL" |
OrgDb |
OrgDb |
category |
MSigDB collection abbreviation, such as H or C1. |
Examples
hyper_GS(object, which, type)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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