runGSEA: runGSEA Module

In xiayh17/RNAseqStat2: A Pipeline to Process RNAseq Data

runGSEA Module

Description

runGSEA Module control GO and KEGG

Usage

runGSEA(
  obj,
  dir = ".",
  prefix = "4-runGSEA",
  top = 10,
  GO = FALSE,
  KEGG = TRUE
)

Arguments

obj	a DEGContainer
dir	a directory to store results
prefix	a prefix of file names in this step
top	top rows of up and down
GO	run GO
KEGG	run KEGG

Examples

runGSEA(DEGContainer)

xiayh17/RNAseqStat2 documentation built on May 27, 2023, 12:13 p.m.