pca_check: PCA QC check
In xiayh17/RNAseqStat2: A Pipeline to Process RNAseq Data
pca_check R Documentation
PCA QC check
Description
check data quality by PCA plot
Usage
pca_check(
data,
group,
dir = ".",
prefix = "1-run_check",
palette = RColorBrewer::brewer.pal(3, "Set2")[1:2]
)
Arguments
data
a cpm data frame of rows in genes and columns in samples
group
a list ordered by samples in data
dir
a directory to store results
prefix
a prefix of file names in this step
palette
a color palette for plots
Value
a figure of PCA
Examples
pca_check(data, group)
xiayh17/RNAseqStat2 documentation built on May 27, 2023, 12:13 p.m.
R Package Documentation
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| pca_check | R Documentation |
PCA QC check
Description
check data quality by PCA plot
Usage
pca_check(
data,
group,
dir = ".",
prefix = "1-run_check",
palette = RColorBrewer::brewer.pal(3, "Set2")[1:2]
)
Arguments
data |
a cpm data frame of rows in genes and columns in samples |
group |
a list ordered by samples in data |
dir |
a directory to store results |
prefix |
a prefix of file names in this step |
palette |
a color palette for plots |
Value
a figure of PCA
Examples
pca_check(data, group)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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