runDEG: run DEG analysis
In xiayh17/RNAseqStat2: A Pipeline to Process RNAseq Data

runDEG

R Documentation

run DEG analysis

Description

run DEG analysis and summary results

Usage

runDEG(
  obj,
  dir = ".",
  prefix = "2-runDEG",
  parallel = TRUE,
  qc = TRUE,
  PointVolcanoParam = list(gene = 10, light = NULL, light_color = "#24ac56",
    light_label_color = "#24ac56", expend = c(0.12, 0.12))
)

Arguments

`obj`	a DEGContainer
`dir`	a directory to store results
`prefix`	a prefix of file names in this step
`parallel`	use parallel in DESeq2
`qc`	qc in DESeq2
`PointVolcanoParam`	for volcano plot