PointVolcano: Showing gene labels and highlighting gene points in a volcano...

In xiayh17/RNAseqStat2: A Pipeline to Process RNAseq Data

Showing gene labels and highlighting gene points in a volcano plot in ggplot

Description

specific some genes to label

Usage

PointVolcano(
  object,
  which,
  category = "H",
  gene,
  light = NULL,
  light_color = "#24ac56",
  light_label_color = "#24ac56",
  expend = c(0.12, 0.12),
  nudge_y_up = -6.5,
  nudge_y_down = -4
)

Arguments

object	an DEGContainer
which	limma edgeR or DESeq2
category	MSigDB collection abbreviation, such as H or C1.
gene	number or gene name
light	number or gene name
light_color	character
light_label_color	character
expend	c(0.12, 0.12)
nudge_y_up	nudge up gene label in y direction
nudge_y_down	nudge down gene label in y direction

Value

a ggplot ob

Examples

PointVolcano(DEGContainer,"limma")

xiayh17/RNAseqStat2 documentation built on May 27, 2023, 12:13 p.m.