top1000_check: Heatmap of all samples and Top1000 genes

In xiayh17/RNAseqStat2: A Pipeline to Process RNAseq Data

Heatmap of all samples and Top1000 genes

Description

Check data quality by plotting heatmap of top 1000 genes

Usage

top1000_check(
  data,
  group,
  dir = ".",
  prefix = "1-run_check",
  palette = RColorBrewer::brewer.pal(3, "Set2")[1:2]
)

Arguments

data	a cpm data frame of rows in genes and columns in samples
group	a list ordered by samples in data
dir	a directory to store results
prefix	a prefix of file names in this step
palette	a color palette for plots

Value

a Heatmap shows top100 genes of all samples

Examples

top1000_check(data, group)

xiayh17/RNAseqStat2 documentation built on May 27, 2023, 12:13 p.m.