top1000_check: Heatmap of all samples and Top1000 genes

View source: R/runCheck.R

top1000_checkR Documentation

Heatmap of all samples and Top1000 genes

Description

Check data quality by plotting heatmap of top 1000 genes

Usage

top1000_check(
  data,
  group,
  dir = ".",
  prefix = "1-run_check",
  palette = RColorBrewer::brewer.pal(3, "Set2")[1:2]
)

Arguments

data

a cpm data frame of rows in genes and columns in samples

group

a list ordered by samples in data

dir

a directory to store results

prefix

a prefix of file names in this step

palette

a color palette for plots

Value

a Heatmap shows top100 genes of all samples

Examples

top1000_check(data, group)

xiayh17/RNAseqStat2 documentation built on May 27, 2023, 12:13 p.m.