runCheck: Check you data by PCA and Heatmaps

In xiayh17/RNAseqStat2: A Pipeline to Process RNAseq Data

Check you data by PCA and Heatmaps

Description

A previous check function for overview the data sets.

Usage

runCheck(
  object,
  dir = ".",
  prefix = "1-run_check",
  palette = RColorBrewer::brewer.pal(3, "Set2")[1:2]
)

Arguments

object	a DEGContainer contains at least dataInfo
dir	a directory to store results
prefix	a prefix of file names in this step
palette	a color palette for plots

Examples

runCheck(object, tempdir())

xiayh17/RNAseqStat2 documentation built on May 27, 2023, 12:13 p.m.