API for zcollest/scRegNetwrapper
Wrapper functions for single cell regulatory network analysis (DoRothEA, PROGENy, pySCENIC) as well as tools for downstream analysis and method comparisons.
| Global functions | |
|---|---|
| correlation_analysis | Man page Source code |
| custom_pathways_calc | Man page Source code |
| custom_regulons_calc | Man page Source code |
| downstream_heatmap | Man page Source code |
| find_associated_TFs | Man page Source code |
| find_associated_pathways | Man page Source code |
| get_dorothea_regulons | Man page Source code |
| get_progeny_pathways | Man page Source code |
| handle_dorothea_scores | Man page Source code |
| handle_progeny_scores | Man page Source code |
| handle_pyscenic_results | Man page Source code |
| pathway_effsize_calc | Man page Source code |
| plot_RSS | Man page Source code |
| pooledSD | Man page Source code |
| reformat_progeny_pathways | Man page Source code |
| run_aucell | Man page Source code |
| run_cistarget | Man page Source code |
| run_dorothea | Man page Source code |
| run_grn | Man page Source code |
| run_loom_setup | Man page Source code |
| run_progeny | Man page Source code |
| tf_effsize_calc | Man page Source code |
