reformat_progeny_pathways: Reformat the progeny pathway data when you select only the...
In zcollest/scRegNetwrapper: Wrapper functions for single cell regulatory network analysis (DoRothEA, PROGENy, pySCENIC) as well as tools for downstream analysis and method comparisons.
Description
Usage
Arguments
Examples
View source: R/reformat_progeny_pathways.R
Description
When selecting progeny pathway data and choosing only a subset of the top genes from each pathway, the output is a sparse matrix and is not conducive for downstream analysis. This reformats to a long data frame.
Usage
1
reformat_progeny_pathways(pathway_data)
Arguments
pathway_data
progeny pathway data for top n genes (from get_progeny_pathways() function)
Examples
1
reformat_progeny_pathways(pathway_data = top500genes_progenypathways)
zcollest/scRegNetwrapper documentation built on Dec. 23, 2021, 9:14 p.m.
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Description Usage Arguments Examples
View source: R/reformat_progeny_pathways.R
Description
When selecting progeny pathway data and choosing only a subset of the top genes from each pathway, the output is a sparse matrix and is not conducive for downstream analysis. This reformats to a long data frame.
Usage
1 | reformat_progeny_pathways(pathway_data)
|
Arguments
pathway_data |
progeny pathway data for top n genes (from |
Examples
1 | reformat_progeny_pathways(pathway_data = top500genes_progenypathways)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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