run_cistarget: Uses reticulate package to run CisTarget (regulon prediction)...
In zcollest/scRegNetwrapper: Wrapper functions for single cell regulatory network analysis (DoRothEA, PROGENy, pySCENIC) as well as tools for downstream analysis and method comparisons.

Run pySCENIC pipeline

run_cistarget(
  dir,
  adjacencies_fname,
  loom_path,
  rank_db_path,
  motif_path,
  regulons_fname
)

`dir`	directory path to output pySCENIC results
`adjacencies_fname`	filename of adjacencies output
`loom_path`	path to initial loom file
`rank_db_path`	path to ranking database
`motif_path`	path to motif list
`regulons_fname`	filename for outputting regulons

1	run_cistarget(dir, adjacencies_fname, loom_path, rank_db_path, motif_path, regulons_fname)

zcollest/scRegNetwrapper documentation built on Dec. 23, 2021, 9:14 p.m.

zcollest/scRegNetwrapper index

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