handle_dorothea_scores: Handling the dorothea scores (proportion adjustments,...

In zcollest/scRegNetwrapper: Wrapper functions for single cell regulatory network analysis (DoRothEA, PROGENy, pySCENIC) as well as tools for downstream analysis and method comparisons.

Description

Takes a Seurat object and produces a list of data frames that are necessary for downstream analysis

Usage

handle_dorothea_scores(
  seurat_obj,
  comparison_feature,
  topTFs,
  assay_name = NULL
)

Arguments

seurat_obj	Seurat object
comparison_feature	which metadata do you want to do comparisons for?
topTFs	number of top TFs to be us ed for heatmap downstream
assay_name	if using custom TFs, what's the assay name?

Examples

handle_dorothea_scores(seurat_obj,seurat_obj$meta.data$cell_type, 30)

zcollest/scRegNetwrapper documentation built on Dec. 23, 2021, 9:14 p.m.