get_progeny_pathways: Returning PROGENy pathways
In zcollest/scRegNetwrapper: Wrapper functions for single cell regulatory network analysis (DoRothEA, PROGENy, pySCENIC) as well as tools for downstream analysis and method comparisons.
Description
Usage
Arguments
Examples
Description
This function returns PROGENy pathways
Usage
1
get_progeny_pathways(num_genes = NULL, organism = "Human")
Arguments
num_genes
number of top genes to return for each pathway if full_model = FALSE.
organism
"Human" or "Mouse", defaults to "Human".
full_model
return the full model? Defaults to TRUE.
Examples
1
get_progeny_pathways(num_genes=100, "Human")
zcollest/scRegNetwrapper documentation built on Dec. 23, 2021, 9:14 p.m.
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Description Usage Arguments Examples
Description
This function returns PROGENy pathways
Usage
1 | get_progeny_pathways(num_genes = NULL, organism = "Human")
|
Arguments
num_genes |
number of top genes to return for each pathway if full_model = FALSE. |
organism |
"Human" or "Mouse", defaults to "Human". |
full_model |
return the full model? Defaults to TRUE. |
Examples
1 | get_progeny_pathways(num_genes=100, "Human")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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