run_progeny: Calculating pathway activity scores from PROGENy pathways
In zcollest/scRegNetwrapper: Wrapper functions for single cell regulatory network analysis (DoRothEA, PROGENy, pySCENIC) as well as tools for downstream analysis and method comparisons.
Description
Usage
Arguments
Examples
Description
Takes a seurat object and a number of pathway genes and returns the same Seurat object with a "progeny" assay.
Usage
1
run_progeny(seurat_obj, num_genes, organism = "Human")
Arguments
seurat_obj
seurat object
num_genes
number of pathway genes to use for calculations
organism
"Human" or "Mouse", defaults to "Human"
Examples
1
run_progeny(pbmc10k, 500, "Human")
zcollest/scRegNetwrapper documentation built on Dec. 23, 2021, 9:14 p.m.
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Description Usage Arguments Examples
Description
Takes a seurat object and a number of pathway genes and returns the same Seurat object with a "progeny" assay.
Usage
1 | run_progeny(seurat_obj, num_genes, organism = "Human")
|
Arguments
seurat_obj |
seurat object |
num_genes |
number of pathway genes to use for calculations |
organism |
"Human" or "Mouse", defaults to "Human" |
Examples
1 | run_progeny(pbmc10k, 500, "Human")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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