run_loom_setup: Uses reticulate package to set up loom file for pySCENIC...
In zcollest/scRegNetwrapper: Wrapper functions for single cell regulatory network analysis (DoRothEA, PROGENy, pySCENIC) as well as tools for downstream analysis and method comparisons.
Description
Usage
Arguments
Examples
Description
Run GRN from pySCENIC
Usage
1
run_loom_setup(anndata_path, loom_path)
Arguments
anndata_path
path to anndata object
loom_path
path to write initial loom file
Examples
1
run_loom_setup(anndata_path, loom_path)
zcollest/scRegNetwrapper documentation built on Dec. 23, 2021, 9:14 p.m.
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Description Usage Arguments Examples
Description
Run GRN from pySCENIC
Usage
1 | run_loom_setup(anndata_path, loom_path)
|
Arguments
anndata_path |
path to anndata object |
loom_path |
path to write initial loom file |
Examples
1 | run_loom_setup(anndata_path, loom_path)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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