run_grn: Uses reticulate package to run GRN from R
In zcollest/scRegNetwrapper: Wrapper functions for single cell regulatory network analysis (DoRothEA, PROGENy, pySCENIC) as well as tools for downstream analysis and method comparisons.
Description
Usage
Arguments
Examples
Description
Run GRN from pySCENIC pipeline
Usage
1
Arguments
dir
directory path to output pySCENIC results
loom_path
path to initial loom file
tfs_path
path to list of TFs
adjacencies_fname
filename for outputting adjacencies
Examples
1
zcollest/scRegNetwrapper documentation built on Dec. 23, 2021, 9:14 p.m.
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Description Usage Arguments Examples
Description
Run GRN from pySCENIC pipeline
Usage
1 |
Arguments
dir |
directory path to output pySCENIC results |
loom_path |
path to initial loom file |
tfs_path |
path to list of TFs |
adjacencies_fname |
filename for outputting adjacencies |
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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