Files in zcollest/scRegNetwrapper
Wrapper functions for single cell regulatory network analysis (DoRothEA, PROGENy, pySCENIC) as well as tools for downstream analysis and method comparisons.
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/correlation_analysis.R
R/dorothea_effectsize_calculations.R
R/dorothea_progeny_heatmap.R
R/find_associated_TFs.R
R/find_associated_pathways.R
R/handle_dorothea_scores.R
R/handle_progeny_scores.R
R/handle_pySCENIC_results.R
R/plot_RSS.R
R/pooledSD_calculation.R
R/progeny_effectsize_calculations.R
R/reformat_progeny_pathways.R
R/run_dorothea.R
R/run_progeny.R
R/run_pySCENIC.R
README.md
inst/python/handle_SCENIC_results.py
inst/python/plot_RSS.py
inst/python/run_pySCENIC.py
man/correlation_analysis.Rd
man/custom_pathways_calc.Rd
man/custom_regulons_calc.Rd
man/downstream_heatmap.Rd
man/find_associated_TFs.Rd
man/find_associated_pathways.Rd
man/get_dorothea_regulons.Rd
man/get_progeny_pathways.Rd
man/handle_dorothea_scores.Rd
man/handle_progeny_scores.Rd
man/handle_pyscenic_results.Rd
man/pathway_effsize_calc.Rd
man/plot_RSS.Rd
man/pooledSD.Rd
man/reformat_progeny_pathways.Rd
man/run_aucell.Rd
man/run_cistarget.Rd
man/run_dorothea.Rd
man/run_grn.Rd
man/run_loom_setup.Rd
man/run_progeny.Rd
man/tf_effsize_calc.Rd
requirements.txt
scRegNetwrapper.Rproj
