Description Usage Arguments Details Value Author(s) Examples
Functions that have passed on to the function afterlife. Their successors are also listed.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 |
... |
Ignored arguments. |
trendVar
, decomposeVar
and testVar
are succeeded by a suite of funtions related to modelGeneVar
and fitTrendVar
.
improvedCV2
and technicalCV2
are succeeded by modelGeneCV2
and fitTrendCV2
.
makeTechTrend
is succeeded by modelGeneVarByPoisson
.
multiBlockVar
is succeeded by the block
argument in many of the modelling functions, and multiBlockNorm
is no longer necessary.
overlapExprs
is succeeded by findMarkers
with test.type="wilcox"
.
parallelPCA
has been moved over to the PCAtools package.
All functions error out with a defunct message pointing towards its descendent (if available).
Aaron Lun
1 |
Loading required package: BiocParallel
Loading required package: scater
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colMeans, colSums, colnames,
dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, lengths, mapply, match, mget,
order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
union, unique, unsplit, which, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: ggplot2
Attaching package: 'scater'
The following object is masked from 'package:stats':
filter
Error in (function (classes, fdef, mtable) :
unable to find an inherited method for function 'trendVar' for signature '"missing"'
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