correction.entropy: Correction entropy from the Finite Sample Size Effect
In MEET: MEET: Motif Elements Estimation Toolkit
Description
Usage
Arguments
Details
Author(s)
References
See Also
Examples
View source: R/correction.entropy.R
Description
Each training matrix is formed by a finite number of samples. The probability estimation error using the nucleotide frequency causes a bias on the uncertainty measurement
Usage
1
correction.entropy(q, p, long, iicc)
Arguments
q
Renyi Order
p
Sample size
long
Length of the binding site
iicc
A list of options
Details
Sample size has to be =< 50.
Author(s)
Joan Maynou <joan.maynou@upc.edu>
References
T. D. Schneider, G. Stormo, L. Gold, and A. Ehrenfeuch, The information content of binding sites on nucleotide sequences, J. Mol. Biol., vol. 188, Nov. 1986.
See Also
correctionaprox,entropy, redundancy, correction.redundancy
Examples
1
2
3
4
5
data(TranscriptionFactor)
data(iicc)
data(BackgroundOrganism)
data(RenyiOrder)
correction.entropy(q,p=nrow(TranscriptionFactor),long=1,iicc)
MEET documentation built on May 2, 2019, 5:52 p.m.
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Description Usage Arguments Details Author(s) References See Also Examples
View source: R/correction.entropy.R
Description
Each training matrix is formed by a finite number of samples. The probability estimation error using the nucleotide frequency causes a bias on the uncertainty measurement
Usage
1 | correction.entropy(q, p, long, iicc)
|
Arguments
q |
Renyi Order |
p |
Sample size |
long |
Length of the binding site |
iicc |
A list of options |
Details
Sample size has to be =< 50.
Author(s)
Joan Maynou <joan.maynou@upc.edu>
References
T. D. Schneider, G. Stormo, L. Gold, and A. Ehrenfeuch, The information content of binding sites on nucleotide sequences, J. Mol. Biol., vol. 188, Nov. 1986.
See Also
correctionaprox,entropy, redundancy, correction.redundancy
Examples
1 2 3 4 5 | data(TranscriptionFactor)
data(iicc)
data(BackgroundOrganism)
data(RenyiOrder)
correction.entropy(q,p=nrow(TranscriptionFactor),long=1,iicc)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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