ConstructModel: A set of functions for training of motif discovery...
In MEET: MEET: Motif Elements Estimation Toolkit
Description
Usage
Arguments
Details
Author(s)
See Also
Examples
View source: R/ConstructModel.R
Description
This function contains a set of functions for training of motif discovery algorithms. Specifically, the motif discovery algorithms are ITEME, MEME, MDscan, MATCH and Qresiduals.
Usage
1
ConstructModel(iicc, TF)
Arguments
iicc
Set of initial conditions for the MEET-package: mode, method, background,alignment,threshold,parameters,Transcriptionfactor,nummotif,lenmotif,sentit,position,missing,vector,gapopen,maxiters,gapextend
TF
A set of nucleotide sequences
Details
This function has two output: training scores and ROC curve.
Author(s)
Erola Pairo <epairo@ibecbarcelona.eu> and Joan Maynou <joan.maynou@upc.edu>
See Also
MEET, detection
Examples
1
2
3
data(iicc)
pathMEET<-system.file("exdata",package="MEET")
ConstructModel(iicc,TF=paste(pathMEET,"AP1.fa",sep="/"))
MEET documentation built on May 2, 2019, 5:52 p.m.
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Description Usage Arguments Details Author(s) See Also Examples
View source: R/ConstructModel.R
Description
This function contains a set of functions for training of motif discovery algorithms. Specifically, the motif discovery algorithms are ITEME, MEME, MDscan, MATCH and Qresiduals.
Usage
1 | ConstructModel(iicc, TF)
|
Arguments
iicc |
Set of initial conditions for the MEET-package: mode, method, background,alignment,threshold,parameters,Transcriptionfactor,nummotif,lenmotif,sentit,position,missing,vector,gapopen,maxiters,gapextend |
TF |
A set of nucleotide sequences |
Details
This function has two output: training scores and ROC curve.
Author(s)
Erola Pairo <epairo@ibecbarcelona.eu> and Joan Maynou <joan.maynou@upc.edu>
See Also
MEET, detection
Examples
1 2 3 | data(iicc)
pathMEET<-system.file("exdata",package="MEET")
ConstructModel(iicc,TF=paste(pathMEET,"AP1.fa",sep="/"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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