correctionaprox: Correction Entropy Approximate from the Finite Sample Size...
In MEET: MEET: Motif Elements Estimation Toolkit
Description
Usage
Arguments
Details
Author(s)
References
See Also
Examples
View source: R/correctionaprox.R
Description
Each training matrix is formed by a finite number of samples. The probability estimation error using the nucleotide frequency causes a bias on the uncertainty measurement The approximation method is used for sample size is more than or equal to 50.
Usage
1
correctionaprox(x, matriu, s)
Arguments
x
Maximum entropy
matriu
A set of aligned nucleotide sequences.
s
Number of symbols
Details
Sample size has to be > 50.
Author(s)
Joan Maynou <joan.maynou@upc.edu>
References
T. D. Schneider, G. Stormo, L. Gold, and A. Ehrenfeuch, The information content of binding sites on nucleotide sequences, J. Mol. Biol., vol. 188, Nov. 1986.
See Also
entropy, redundancy, correction.redundancy, correction.entropy
Examples
1
2
3
data(iicc)
s<-4
correctionaprox(x=iicc$HXmax,matriu=iicc$Transcriptionfactor,s)
MEET documentation built on May 2, 2019, 5:52 p.m.
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Description Usage Arguments Details Author(s) References See Also Examples
View source: R/correctionaprox.R
Description
Each training matrix is formed by a finite number of samples. The probability estimation error using the nucleotide frequency causes a bias on the uncertainty measurement The approximation method is used for sample size is more than or equal to 50.
Usage
1 | correctionaprox(x, matriu, s)
|
Arguments
x |
Maximum entropy |
matriu |
A set of aligned nucleotide sequences. |
s |
Number of symbols |
Details
Sample size has to be > 50.
Author(s)
Joan Maynou <joan.maynou@upc.edu>
References
T. D. Schneider, G. Stormo, L. Gold, and A. Ehrenfeuch, The information content of binding sites on nucleotide sequences, J. Mol. Biol., vol. 188, Nov. 1986.
See Also
entropy, redundancy, correction.redundancy, correction.entropy
Examples
1 2 3 | data(iicc)
s<-4
correctionaprox(x=iicc$HXmax,matriu=iicc$Transcriptionfactor,s)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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