Description Arguments Details Author(s) Examples

MEET (Motif Elements Estimation Toolkit) is a R-package that integrates a set of computational algorithms for the detection of Transcription Factor Binding Sites (TFBS).

`TF` |
A set of nucleotide sequences |

`seqin` |
Candidate sequence |

`alg` |
A set of Multiple Sequence Alignment |

`method` |
A set of motif discovery algorithms |

`system` |
Training or detection |

`org` |
Background organism |

`vector` |
A set of Renyi Order (ITEME method) for leave-one-out cross-training |

`num_motif` |
Number of motif |

`len_motif` |
Length of motif |

`direction` |
Forward, reverse or both |

`threshold` |
P-value |

`order` |
Renyi Order |

`position` |
Binding site position for training |

`mv` |
missing values |

`gapopen` |
The gap open score |

`maxiters` |
Maximum number of iterations |

`gapextend` |
The gap extend score |

Package: | MEET |

Type: | Package |

Version: | 1.0 |

Date: | 2010-08-20 |

License: | GPL(>=2) |

LazyLoad: | yes |

Erola Pairo <[email protected]> and Joan Maynou <[email protected]>

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