detection: Detection: A set of functions for detection of TFBS

Description Usage Arguments Details Author(s) See Also Examples

Description

This function contains a set of functions for detection of Transcription Factor Binding Sites. Specifically, motif discovery algorithms are ITEME, MEME, MDscan, MATCH and Qresiduals.

Usage

1

Arguments

iicc

Set of initial conditions for the MEET-package: mode, method, background,alignment,pvalor,parameters,Transcriptionfactor, nummotif,lenmotif,sentit,position,missing,vector,gapopen, maxiters,gapextend

Details

The main parameter is method ( a set of motif discovery algorithms: ITEME(Entropy, divergence), Q-residuals, MEME, Match and MDscan)

Author(s)

Erola Pairo <epairo@ibecbarcelona.eu> and Joan Maynou <joan.maynou@upc.edu>

See Also

MEET, ConstructModel

Examples

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MEET documentation built on May 2, 2019, 5:52 p.m.