detection: Detection: A set of functions for detection of TFBS
In MEET: MEET: Motif Elements Estimation Toolkit
Description
Usage
Arguments
Details
Author(s)
See Also
Examples
Description
This function contains a set of functions for detection of Transcription Factor Binding Sites. Specifically, motif discovery algorithms are ITEME, MEME, MDscan, MATCH and Qresiduals.
Usage
1
Arguments
iicc
Set of initial conditions for the MEET-package: mode, method,
background,alignment,pvalor,parameters,Transcriptionfactor,
nummotif,lenmotif,sentit,position,missing,vector,gapopen,
maxiters,gapextend
Details
The main parameter is method ( a set of motif discovery algorithms:
ITEME(Entropy, divergence), Q-residuals, MEME, Match and MDscan)
Author(s)
Erola Pairo <epairo@ibecbarcelona.eu> and Joan Maynou <joan.maynou@upc.edu>
See Also
MEET, ConstructModel
Examples
1
2
MEET documentation built on May 2, 2019, 5:52 p.m.
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Description Usage Arguments Details Author(s) See Also Examples
Description
This function contains a set of functions for detection of Transcription Factor Binding Sites. Specifically, motif discovery algorithms are ITEME, MEME, MDscan, MATCH and Qresiduals.
Usage
1 |
Arguments
iicc |
Set of initial conditions for the MEET-package: mode, method, background,alignment,pvalor,parameters,Transcriptionfactor, nummotif,lenmotif,sentit,position,missing,vector,gapopen, maxiters,gapextend |
Details
The main parameter is method ( a set of motif discovery algorithms: ITEME(Entropy, divergence), Q-residuals, MEME, Match and MDscan)
Author(s)
Erola Pairo <epairo@ibecbarcelona.eu> and Joan Maynou <joan.maynou@upc.edu>
See Also
MEET, ConstructModel
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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