Alignment: To line up Transcription Factor Binding Sites through...
In MEET: MEET: Motif Elements Estimation Toolkit

This function, Alignment, lines up Transcription Factor Binding Sites, TFBS, through MSA. There are different kinds of MSA: MEME, Clustalw and Muscle

1	Alignment(TF,iicc)

`TF`	Transcription Factor
`iicc`	A set of inicial conditions for the MEET-package

Joan Maynou <joan.maynou@upc.edu> and Erola Pairo <epairo@ibecbarcelona.eu>

require(MEET)
data(iicc)
pathMEET<-system.file("exdata",package="MEET")
Alignment(TF=paste(pathMEET,"AP1.fa",sep="/"),iicc)

MEET documentation built on May 2, 2019, 5:52 p.m.

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