ELMER
Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes

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ELMER: Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes
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API

API for ELMER
Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes

Global functions
.fun Source code Source code Source code Source code Source code Source code
ELMER Man page
Get.Pvalue.p Man page Source code
GetNearGenes Man page Source code
Stat.diff.meth Man page Source code
Stat.nonpara Man page Source code
Stat.nonpara.permu Man page Source code
TCGA.pipe Man page Source code
TF.rank.plot Man page Source code
TFsurvival.plot Man page Source code
addDistNearestTSS Man page Source code
addMutCol Man page Source code
calcDistNearestTSS Man page Source code
calculateEnrichement Man page Source code
checkData Source code
createBigWigDNAmetArray Man page Source code
createIGVtrack Man page Source code
createMAE Man page
createMotifRelevantTfs Man page Source code
createSummaryDocument Man page Source code
createTSVTemplates Man page Source code
findMotifRegion Man page Source code
get.GRCh Source code
get.TFs Man page
get.diff.meth Man page Source code
get.enriched.motif Man page
get.feature.probe Man page Source code
get.pair Man page
get.permu Man page
get.tab Man page Source code
get.tab.or Source code
get.tab.pval Source code
get.tabs Man page Source code
get.tf.or.table Source code
get.top.tf.by.pval Source code
get450K Man page Source code
getClinic Man page Source code
getExp Man page Source code
getExpSamples Man page Source code
getGeneID Man page Source code
getHocomocoTable Source code
getInfiniumAnnotation Source code
getMatrix Source code
getMet Man page Source code
getMetSamples Man page Source code
getRNAseq Man page Source code
getRandomPairs Man page Source code
getRegionNearGenes Man page Source code
getSymbol Man page Source code
getTCGA Man page Source code
getTF Man page Source code
getTFBindingSites Man page Source code
getTFtargets Man page
getTSS Man page Source code
getdata Source code
heatmapGene Man page Source code
heatmapPairs Man page Source code
lm_eqn Man page Source code
makeSummarizedExperimentFromDNAMethylation Source code
makeSummarizedExperimentFromGeneMatrix Source code
metBoxPlot Man page Source code
motif.enrichment.plot Man page Source code
preAssociationProbeFiltering Man page Source code
print.header Source code
promoterMeth Man page
render_report Man page Source code
scatter Man page Source code
scatter.plot Man page Source code
schematic Source code
schematic.plot Man page Source code
splitmatrix Source code
summarizeTF Man page
ELMER documentation built on Nov. 8, 2020, 4:59 p.m.

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