API for GeneAnswers
Integrated Interpretation of Genes
| Global functions | |
|---|---|
| .caBIOLink | Source code |
| .catsCluster | Source code |
| .colorMatch | Source code |
| .convertCytoscapeWeb | Source code |
| .defaultHeatmapColors | Source code |
| .drawHTMLtable | Source code |
| .drawTable | Source code |
| .filterGOIDs | Source code |
| .getGOTerms | Source code |
| .getSingleGraphIDs | Source code |
| .getcaBIOIDInfo | Source code |
| .getcaBIOPATHGenes | Source code |
| .getcaBIOPATHInfo | Source code |
| .getcaBIOPATHs | Source code |
| .heatmap.mds | Source code |
| .hyperGTest | Source code |
| .list2matrix | Source code |
| .mapListcaBIOIDs2entrez | Source code |
| .matrix2list | Source code |
| .name2lib | Source code |
| .onLoad | Source code |
| .overReprsTest | Source code |
| .removeDuplicatedEdge | Source code |
| .searchEntrezTag | Source code |
| .searchEntrezTerm | Source code |
| .treeMerge | Source code |
| DO | Man page |
| DO.graph.closure.gene | Man page |
| DO.graph.gene | Man page |
| DO.terms | Man page |
| DO2gene.map | Man page |
| DOLite | Man page |
| DOLiteTerm | Man page |
| DmIALite | Man page |
| GeneAnswers | Man page |
| GeneAnswers-class | Man page |
| GeneAnswers-package | Man page |
| HsIALite | Man page |
| MmIALite | Man page |
| RnIALite | Man page |
| `buildNet` | Source code |
| `caBIO2entrez` | Source code |
| `categoryNet` | Source code |
| `chartPlots` | Source code |
| `drawTable` | Source code |
| `entrez2caBIO` | Source code |
| `geneAnnotationHeatmap` | Source code |
| `geneAnswersBuilder` | Source code |
| `geneAnswersChartPlots` | Source code |
| `geneAnswersConceptNet` | Source code |
| `geneAnswersConceptRelation` | Source code |
| `geneAnswersConcepts` | Source code |
| `geneAnswersHomoMapping` | Source code |
| `geneAnswersReadable` | Source code |
| `geneAnswersSort` | Source code |
| `geneConceptNet` | Source code |
| `getCategoryList` | Source code |
| `getCategoryTerms` | Source code |
| `getConnectedGraph` | Source code |
| `getDOLiteTerms` | Source code |
| `getGOList` | Source code |
| `getListGIF` | Source code |
| `getMultiLayerGraphIDs` | Source code |
| `getPATHList` | Source code |
| `getPATHTerms` | Source code |
| `getREACTOMEPATHList` | Source code |
| `getREACTOMEPATHTerms` | Source code |
| `getSingleLayerGraphIDs` | Source code |
| `getTotalGeneNumber` | Source code |
| `getcaBIOPATHList` | Source code |
| `getcaBIOPATHTerms` | Source code |
| `groupReport` | Source code |
| `searchEntrez` | Source code |
| `topCategoryGenes` | Source code |
| `topCategory` | Source code |
| `topDOLITEGenes` | Source code |
| `topDOLITE` | Source code |
| `topGOGenes` | Source code |
| `topGO` | Source code |
| `topPATHGenes` | Source code |
| `topPATH` | Source code |
| `topREACTOME.PATHGenes` | Source code |
| `topREACTOME.PATH` | Source code |
| `topcaBIO.PATHGenes` | Source code |
| `topcaBIO.PATH` | Source code |
| buildNet | Man page |
| caBIO2entrez | Man page |
| categoryNet | Man page |
| chartPlots | Man page |
| class:GeneAnswers | Man page |
| drawTable | Man page |
| entrez2caBIO | Man page |
| gene2DO.map | Man page |
| geneAnnotationHeatmap | Man page |
| geneAnswersBuilder | Man page |
| geneAnswersChartPlots | Man page |
| geneAnswersConceptNet | Man page |
| geneAnswersConceptRelation | Man page |
| geneAnswersConcepts | Man page |
| geneAnswersHeatmap | Man page |
| geneAnswersHomoMapping | Man page |
| geneAnswersReadable | Man page |
| geneAnswersSort | Man page |
| geneConceptNet | Man page |
| getAnnLib | Man page |
| getAnnLib,GeneAnswers-method | Man page |
| getCategoryList | Man page |
| getCategoryTerms | Man page |
| getCategoryType | Man page |
| getCategoryType,GeneAnswers-method | Man page |
| getConceptTable | Man page |
| getConnectedGraph | Man page |
| getDOLiteTerms | Man page |
| getEnrichmentInfo | Man page |
| getEnrichmentInfo,GeneAnswers-method | Man page |
| getGOList | Man page |
| getGeneExprProfile | Man page |
| getGeneExprProfile,GeneAnswers-method | Man page |
| getGeneInput | Man page |
| getGeneInput,GeneAnswers-method | Man page |
| getGenesInCategory | Man page |
| getGenesInCategory,GeneAnswers-method | Man page |
| getHomoGeneIDs | Man page |
| getListGIF | Man page |
| getMultiLayerGraphIDs | Man page |
| getNextGOIDs | Man page |
| getPATHList | Man page |
| getPATHTerms | Man page |
| getPValueT | Man page |
| getPValueT,GeneAnswers-method | Man page |
| getREACTOMEPATHList | Man page |
| getREACTOMEPATHTerms | Man page |
| getSingleLayerGraphIDs | Man page |
| getSymbols | Man page |
| getTestType | Man page |
| getTestType,GeneAnswers-method | Man page |
| getTotalGeneNumber | Man page |
| getcaBIOPATHList | Man page |
| getcaBIOPATHTerms | Man page |
| groupReport | Man page |
| humanExpr | Man page |
| humanGeneInput | Man page |
| mouseExpr | Man page |
| mouseGeneInput | Man page |
| sampleGroupsData | Man page |
| searchEntrez | Man page |
| setAnnLib | Man page |
| setAnnLib,GeneAnswers-method | Man page |
| setCategoryType | Man page |
| setCategoryType,GeneAnswers-method | Man page |
| setEnrichmentInfo | Man page |
| setEnrichmentInfo,GeneAnswers-method | Man page |
| setGeneExprProfile | Man page |
| setGeneExprProfile,GeneAnswers-method | Man page |
| setGeneInput | Man page |
| setGeneInput,GeneAnswers-method | Man page |
| setGenesInCategory | Man page |
| setGenesInCategory,GeneAnswers-method | Man page |
| setPValueT | Man page |
| setPValueT,GeneAnswers-method | Man page |
| setTestType | Man page |
| setTestType,GeneAnswers-method | Man page |
| show | Man page |
| show,GeneAnswers-method | Man page |
| summary | Man page |
| summary,GeneAnswers-method | Man page |
| topCategory | Man page |
| topCategoryGenes | Man page |
| topDOLITE | Man page |
| topDOLITEGenes | Man page |
| topGO | Man page |
| topGOGenes | Man page |
| topPATH | Man page |
| topPATHGenes | Man page |
| topREACTOME.PATH | Man page |
| topREACTOME.PATHGenes | Man page |
| topcaBIO.PATH | Man page |
| topcaBIO.PATHGenes | Man page |
