API for HTSanalyzeR
Gene set over-representation, enrichment and network analyses for high-throughput screens
| Global functions | |
|---|---|
| .onAttach | Source code |
| .onLoad | Source code |
| Biogrid_DM_Interactome | Man page |
| Biogrid_DM_Mat | Man page |
| FDRcollectionGsea | Man page Source code |
| GOGeneSets | Man page Source code |
| GSCA | Man page |
| GSCA-class | Man page |
| GenHTSAHtmlRowUnit | Man page Source code |
| HTSanalyzeR | Man page |
| HTSanalyzeR-package | Man page |
| HTSanalyzeR4cellHTS2 | Man page Source code |
| KcViab_Data4Enrich | Man page |
| KcViab_GSCA | Man page |
| KcViab_NWA | Man page |
| KcViab_Norm | Man page |
| KcViab_PVals | Man page |
| KeggGeneSets | Man page Source code |
| NWA | Man page |
| NWA-class | Man page |
| aggregatePvals | Man page Source code |
| analyze | Man page |
| analyze,GSCA-method | Man page |
| analyze,NWA-method | Man page |
| analyzeGeneSetCollections | Man page Source code |
| annotationConvertor | Man page Source code |
| appendGSTerms | Man page |
| appendGSTerms,GSCA-method | Man page |
| biogridDataDownload | Man page Source code |
| celAnnotationConvertor | Man page Source code |
| cellHTS2OutputStatTests | Man page Source code |
| changes | Man page Source code |
| collectionGsea | Man page Source code |
| drosoAnnotationConvertor | Man page Source code |
| duplicateRemover | Man page Source code |
| getTopGeneSets | Man page |
| getTopGeneSets,GSCA-method | Man page |
| gseaPlots | Man page Source code |
| gseaScores | Man page Source code |
| gseaScoresBatch | Man page Source code |
| gseaScoresBatchParallel | Man page Source code |
| htmlAttrVectorPaste | Man page Source code |
| hyperGeoTest | Man page Source code |
| interactome | Man page |
| interactome,NWA-method | Man page |
| makeGSEAplots | Man page Source code |
| makeOverlapTable | Man page Source code |
| mammalAnnotationConvertor | Man page Source code |
| multiHyperGeoTest | Man page Source code |
| networkAnalysis | Man page Source code |
| networkPlot | Man page Source code |
| pairwiseGsea | Man page Source code |
| pairwiseGseaPlot | Man page Source code |
| pairwisePhenoMannWhit | Man page Source code |
| paraCheck | Man page Source code |
| permutationPvalueCollectionGsea | Man page Source code |
| plotEnrichMap | Man page |
| plotEnrichMap,GSCA-method | Man page |
| plotGSEA | Man page |
| plotGSEA,GSCA-method | Man page |
| plotSubNet | Man page |
| plotSubNet,NWA-method | Man page |
| preprocess | Man page |
| preprocess,GSCA-method | Man page |
| preprocess,NWA-method | Man page |
| report | Man page |
| report,GSCA-method | Man page |
| report,NWA-method | Man page |
| reportAll | Man page |
| reportAll,GSCA_Or_NULL,NWA_Or_NULL-method | Man page |
| show | Man page |
| show,GSCA-method | Man page |
| show,NWA-method | Man page |
| summarize | Man page |
| summarize,GSCA-method | Man page |
| summarize,NWA-method | Man page |
| viewEnrichMap | Man page |
| viewEnrichMap,GSCA-method | Man page |
| viewGSEA | Man page |
| viewGSEA,GSCA-method | Man page |
| viewSubNet | Man page |
| viewSubNet,NWA-method | Man page |
| writeHTSAHtmlHead | Man page Source code |
| writeHTSAHtmlSummary | Man page Source code |
| writeHTSAHtmlTab | Man page Source code |
| writeHTSAHtmlTable | Man page Source code |
| writeHTSAHtmlTail | Man page Source code |
| writeHits | Man page |
| writeHits,GSCA-method | Man page |
| writeReportHTSA | Man page Source code |
