cloverPvalue1seq: Calculate the Clover P-value as described in the Clover paper

In PWMEnrich: PWM enrichment analysis

Description

This function only take one background sequence as input, it also just calculates the P-value so it is more efficient.

Usage

cloverPvalue1seq(
  scores,
  seq.len,
  pwm.len,
  bg.fwd,
  bg.rev,
  B = 1000,
  verbose = TRUE,
  clover = NULL
)

Arguments

scores	the affinity scores for individual sequences
seq.len	lengths of sequences
pwm.len	lengths of PWMs
bg.fwd	the raw score of forward strand
bg.rev	the raw scores of reverse strand
B	the number of random replicates
verbose	if to give verbose progress reports
clover	the clover scores if already calculated

Value

P-value

PWMEnrich documentation built on Nov. 8, 2020, 7:45 p.m.