motifScoresBigMemory: This is a memory intensive version of motifScore() which is...

In PWMEnrich: PWM enrichment analysis

Description

The parameters and functionality are the same as motifScores. Please refer to documentation of this function for detailed explanation of functionality.

Usage

motifScoresBigMemory(
  sequences,
  motifs,
  raw.scores = FALSE,
  verbose = TRUE,
  cutoff = NULL,
  seq.all = NULL
)

Arguments

sequences	set of input sequences
motifs	set of input PWMs or PFMs
raw.scores	if to return scores for each base-pair
verbose	if to produce verbose output
cutoff	the cutoff for calling binding sites (in base 2 log).
seq.all	already concatenated sequences if already available (used to internally speed up things)

Details

This function is not meant to be called directly, but is indirectly called by motifScores() once a global parameters useBigMemory is set.

See Also

motifScores

PWMEnrich documentation built on Nov. 8, 2020, 7:45 p.m.