gevPerSequence: Apply GEV background normalization per every sequence
In PWMEnrich: PWM enrichment analysis
Description
Apply GEV background normalization per every sequence
Usage
1
gevPerSequence(scores, seq.len, pwm.len, bg.loc, bg.scale, bg.shape)
Arguments
scores
affinity scores for the PWMs, can contain scores for more than one sequence (as rows), P-values are extracted separately
seq.len
the length distribution of the sequences
pwm.len
the lengths of PWMs
bg.loc
list of linear regression for location parameter
bg.scale
list of linear regression for scale parameter
bg.shape
list of linear regression for shape parameter
PWMEnrich documentation built on Nov. 8, 2020, 7:45 p.m.
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Description
Apply GEV background normalization per every sequence
Usage
1 | gevPerSequence(scores, seq.len, pwm.len, bg.loc, bg.scale, bg.shape)
|
Arguments
scores |
affinity scores for the PWMs, can contain scores for more than one sequence (as rows), P-values are extracted separately |
seq.len |
the length distribution of the sequences |
pwm.len |
the lengths of PWMs |
bg.loc |
list of linear regression for location parameter |
bg.scale |
list of linear regression for scale parameter |
bg.shape |
list of linear regression for shape parameter |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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