makePriors: Make priors from background sequences
In PWMEnrich: PWM enrichment analysis
Description
Usage
Arguments
Examples
Description
These priors serve both as background nucleotide frequencies and pseudo-counts
for PWMs.
Usage
1
makePriors(bg.seq, bg.pseudo.count)
Arguments
bg.seq
a set of background sequences
bg.pseudo.count
the total pseudocount shared between nucleotides
Examples
1
2
3
4
# some example sequences
sequences = list(DNAString("AAAGAGAGTGACCGATGAC"), DNAString("ACGATGAGGATGAC"))
# make priors with pseudo-count of 1 shared between them
makePriors(sequences, 1)
PWMEnrich documentation built on Nov. 8, 2020, 7:45 p.m.
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Description Usage Arguments Examples
Description
These priors serve both as background nucleotide frequencies and pseudo-counts for PWMs.
Usage
1 | makePriors(bg.seq, bg.pseudo.count)
|
Arguments
bg.seq |
a set of background sequences |
bg.pseudo.count |
the total pseudocount shared between nucleotides |
Examples
1 2 3 4 | # some example sequences
sequences = list(DNAString("AAAGAGAGTGACCGATGAC"), DNAString("ACGATGAGGATGAC"))
# make priors with pseudo-count of 1 shared between them
makePriors(sequences, 1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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