cutoffZscore: Z-score calculation for cutoff hits
In PWMEnrich: PWM enrichment analysis
Description
Usage
Arguments
Value
Description
The Z-score is calculated separately for each sequence
Usage
1
cutoffZscore(scores, seq.len, pwm.len, bg.P)
Arguments
scores
the hit counts for the sequences
seq.len
the length distribution of sequences
pwm.len
the length distribution of the PWMs
bg.P
background probabilities of observing a motif hit at nucleotide resolution
(scaled to sequence length, not 2 * length)
Value
Z-score
PWMEnrich documentation built on Nov. 8, 2020, 7:45 p.m.
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Description Usage Arguments Value
Description
The Z-score is calculated separately for each sequence
Usage
1 | cutoffZscore(scores, seq.len, pwm.len, bg.P)
|
Arguments
scores |
the hit counts for the sequences |
seq.len |
the length distribution of sequences |
pwm.len |
the length distribution of the PWMs |
bg.P |
background probabilities of observing a motif hit at nucleotide resolution (scaled to sequence length, not 2 * length) |
Value
Z-score
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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