cloverScore: Calculate the Clover score using the recursive formula from...
In PWMEnrich: PWM enrichment analysis
Description
Usage
Arguments
Value
Description
Calculate the Clover score using the recursive formula from Frith et al
Usage
1
cloverScore(scores, lr3 = FALSE, verbose = FALSE)
Arguments
scores
a matrix of average odds scores, where columns are motifs, and rows sequences
lr3
if to return a matrix of LR3 scores, where columns correpond to motifs, and rows to subset sizes
verbose
if to produce verbose output of progress
Value
the LR4 score, which is the mean of LR3 scores over subset sizes
PWMEnrich documentation built on Nov. 8, 2020, 7:45 p.m.
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Description Usage Arguments Value
Description
Calculate the Clover score using the recursive formula from Frith et al
Usage
1 | cloverScore(scores, lr3 = FALSE, verbose = FALSE)
|
Arguments
scores |
a matrix of average odds scores, where columns are motifs, and rows sequences |
lr3 |
if to return a matrix of LR3 scores, where columns correpond to motifs, and rows to subset sizes |
verbose |
if to produce verbose output of progress |
Value
the LR4 score, which is the mean of LR3 scores over subset sizes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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