logNormPval: Calculate the P-value from lognormal distribution with...
In PWMEnrich: PWM enrichment analysis
Description
Calculate the P-value from lognormal distribution with background of equal length
Usage
1
logNormPval(scores, seq.len, pwm.len, bg.mean, bg.sd, bg.len, log = FALSE)
Arguments
scores
affinity scores for the PWMs, can contain scores for more than one sequence (as rows), P-values are extracted separately
seq.len
the length distribution of the sequences
pwm.len
the leggths of PWMs
bg.mean
the mean values from the background for PWMs
bg.sd
the sd values from the background
bg.len
the length distribution of the background (we currently support only constant length)
log
if to produce log p-values
PWMEnrich documentation built on Nov. 8, 2020, 7:45 p.m.
R Package Documentation
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Description
Calculate the P-value from lognormal distribution with background of equal length
Usage
1 | logNormPval(scores, seq.len, pwm.len, bg.mean, bg.sd, bg.len, log = FALSE)
|
Arguments
scores |
affinity scores for the PWMs, can contain scores for more than one sequence (as rows), P-values are extracted separately |
seq.len |
the length distribution of the sequences |
pwm.len |
the leggths of PWMs |
bg.mean |
the mean values from the background for PWMs |
bg.sd |
the sd values from the background |
bg.len |
the length distribution of the background (we currently support only constant length) |
log |
if to produce log p-values |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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