Files in PWMEnrich
PWM enrichment analysis

NAMESPACE
DESCRIPTION
.Rinstignore
build/vignette.rds
man/operators-MotifEnrichmentResults.Rd man/motifEnrichment.Rd man/reverseComplement.Rd man/operators-PWMEmpiricalBackground.Rd man/makePWMGEVBackground.Rd man/scanWithPWM.Rd man/PWMLognBackground.Rd man/PWMUnscaled.Rd man/makePWMPvalCutoffBackgroundFromSeq.Rd man/PFMtoPWM.Rd man/makePWMPvalCutoffBackground.Rd man/plotMultipleMotifs.Rd man/motifDiffEnrichment.Rd man/registerCoresPWMEnrich.Rd man/operators-PWMGEVBackground.Rd man/operators-PWMLognBackground.Rd man/useBigMemoryPWMEnrich.Rd man/motifEcdf.Rd man/subsetting-PWMEmpiricalBackground.Rd man/operators-MotifEnrichmentReport.Rd man/getBackgroundFrequencies.Rd man/seqLogoGrid.Rd man/readMotifs.Rd man/motifRankingForGroup-commaMotifEnrichmentResults-method.Rd man/PWMEmpiricalBackground.Rd man/MotifEnrichmentResults.Rd man/motifIC.Rd man/subsetting-PWMLognBackground.Rd man/plotTopMotifsGroup-commaMotifEnrichmentResults-method.Rd man/motifScores.Rd man/plot.Rd man/operators-PWM.Rd man/PWM.Rd man/subsetting-PWMGEVBackground.Rd man/motifSimilarity.Rd man/makePWMCutoffBackground.Rd man/subsetting-PWMCutoffBackground.Rd man/operators-PWMCutoffBackground.Rd man/makePWMEmpiricalBackground.Rd man/groupReport-commaMotifEnrichmentResults-method.Rd man/as.data.frame-commaMotifEnrichmentReport-method.Rd man/makeBackground.Rd man/motifRankingForSequence-commaMotifEnrichmentResults-method.Rd man/MotifEnrichmentReport.Rd man/makePWMLognBackground.Rd man/PWMGEVBackground.Rd man/plotTopMotifsSequence-commaMotifEnrichmentResults-method.Rd man/sequenceReport-commaMotifEnrichmentResults-method.Rd man/makePriors.Rd man/toPWM.Rd man/plotMotifScores.Rd man/PWMCutoffBackground.Rd tests/test-all.R R/MotifEnrichmentResults-methods.R R/clover.R R/misc.R R/readData.R R/plot.R R/similarity.R R/AllDataClasses.R R/options.R R/AllGenerics.R R/seqLogoSupp.R R/diff.R R/background.R R/pwm.R R/PWMBackground-methods.R R/MotifEnrichmentReport-methods.R R/PWM-methods.R
inst/NEWS
inst/doc/PWMEnrich.R inst/doc/PWMEnrich.pdf
inst/doc/PWMEnrich.Rnw
inst/extdata/example.transfac
inst/extdata/bg.seq-test.RData
inst/extdata/tinman-early-top20.fa
inst/extdata/example.fa
inst/extdata/pfm_vertebrates.txt
inst/extdata/jaspar-insecta.jaspar
inst/extdata/stripe2.fa
inst/tests/test_clover.R inst/tests/test_motifEnrichment.R inst/tests/test_similarity.R inst/tests/test_invalidInput.R
vignettes/references.bib
vignettes/PWMEnrich.Rnw
PWMEnrich documentation built on Nov. 17, 2017, 2:08 p.m.