PWMGEVBackground-class: Generalized Extreme Values (GEV) background for P-values

In PWMEnrich: PWM enrichment analysis

Description

The three parameters of the GEV distribution are fitted by doing linear regression on log of sequence length.

Slots

bg.source:

textual description of where the background distribution is derived from

bg.loc:

linear regression model for estimating the location parameter based on log(L), list of lm objects of PWMs

bg.scale:

linear regression model for estimating the scale parameter based on log(L), list of lm objects of PWMs

bg.shape:

linear regression model for estimating the shape parameter based on log(L), list of lm objects of PWMs

pwms:

the pwms for which the background has been compiled

PWMEnrich documentation built on Nov. 8, 2020, 7:45 p.m.